PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929994.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 479aa    MW: 52291.7 Da    PI: 7.7807
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929994.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-10104126426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C ++ ++GtC++G++CkF+H+
  XP_010929994.1 104 PDCTYYVKNGTCRFGSSCKFNHP 126
                     68********************8 PP

2zf-CCCH22.71.7e-07200222527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C++++  G Ck+G  Ck+ H p
  XP_010929994.1 200 ECKYYSMPGGCKFGKACKYVHHP 222
                     6********************75 PP

3zf-CCCH31.92.3e-10241266126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++++rtG Ck+  +Ck++H+
  XP_010929994.1 241 PGERECPYYMRTGSCKFATNCKYHHP 266
                     5789*********************9 PP

4zf-CCCH253.3e-08383409127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++f++ G Ck+   CkF+H++
  XP_010929994.1 383 PGQPECQYFMKHGVCKFKTACKFHHPK 409
                     5789*********************96 PP

5zf-CCCH35.41.8e-11430454226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C ++ r+G CkyG++CkF H+
  XP_010929994.1 430 DQPVCTHYNRFGVCKYGPSCKFDHP 454
                     6899********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.643100128IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-5100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6101128IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8104126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4106126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.54195223IPR000571Zinc finger, CCCH-type
SMARTSM003560.067195222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-5199225IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-5200221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4201222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596240268IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5240267IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7242266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5243267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.704382410IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013382409IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5384409IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5386410IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4428455IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403428456IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5429455IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8430454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-5433453IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAVSEAEVVP KTEELGLGLA TAASSPSSPS DSFVEALTGE FASLKLEKKS AEEAGDQDNT  60
GAGDQEEITG DENGGVVEKD SGSPGKEKEG KEERFRYPQR LDAPDCTYYV KNGTCRFGSS  120
CKFNHPARRK RNKVKSKKPF EANQAVKEEQ KEPIPKVGQT ESKVDKKEEK ASSDMVGQME  180
CEATEEKGKE TLSERAGQME CKYYSMPGGC KFGKACKYVH HPGKLENNSV QLNFLGLPIR  240
PGERECPYYM RTGSCKFATN CKYHHPDPTA VGGQDPRSGH RNSEPPQHGL GAPQVPMTWP  300
VQRMSNEPIS FLNASPSYVP GMILPPQGFH SNPEWNGYQA PVSPLFPPDI HARNSASTIN  360
HKTNKGDIPV SQQVPVDEYP ERPGQPECQY FMKHGVCKFK TACKFHHPKT RPQTVPVGVL  420
SPVGLPLKPD QPVCTHYNRF GVCKYGPSCK FDHPIGHGSS ASAGVVVSGQ IATPNNATT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127137RRKRNKVKSKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929994.10.0PREDICTED: zinc finger CCCH domain-containing protein 65-like isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-76C3H family protein